Factorize get_organisms and get_organism into gga_run_wf_phaeo.py. Set coherent with gga_run_phaeo_jb (self.common, remove methods present in gga_run_wf_phaeo, add --no-invoke-wf arg

Arthur Le Bars authored 3 years ago and Loraine Gueguen committed 2 years ago

Changed versions of load blast and interpro in Chado galaxy tools from 2.3.4+galaxy0 to 2.3.7+galaxy0 (sqlachemy tool error fix)

Changed versions of load blast and interpro in Chado galaxy tools from 2.3.4+galaxy0 to 2.3.7+galaxy0 (sqlachemy tool error fix)

Arthur Le Bars authored 3 years ago and Arthur Le Bars committed 3 years ago

Added command line argument --no-invoke-wf to prevent workflow invocation with bioblend (workflow is still generated and imported)